{
  "_id": "6ac78835de46216d5edd1c4c",
  "Package": "rwicc",
  "Title": "Regression with Interval-Censored Covariates",
  "Version": "0.2.0.9000",
  "Authors@R": "c(\nperson(given = \"Douglas Ezra\",\nfamily = \"Morrison\",\nrole = c(\"aut\", \"cre\",\"cph\"),\nemail = \"demorrison@ucdavis.edu\",\ncomment = c(ORCID = \"0000-0002-7195-830X\")),\nperson(given = \"Ron\",\nfamily = \"Brookmeyer\",\nrole = c(\"aut\")))",
  "Description": "Provides functions to simulate and analyze data for a\nregression model with an interval censored covariate, as\ndescribed in Morrison et al. (2021) <doi:10.1111/biom.13472>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Language": "en-US",
  "URL": "https://d-morrison.github.io/rwicc/,\nhttps://github.com/d-morrison/rwicc",
  "BugReports": "https://github.com/d-morrison/rwicc/issues",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev",
  "Repository": "https://morrison-lab.r-universe.dev",
  "Date/Publication": "2026-05-29 16:53:56 UTC",
  "RemoteUrl": "https://github.com/morrison-lab/rwicc",
  "RemoteRef": "HEAD",
  "RemoteSha": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-08 11:47:02 UTC",
    "User": "root"
  },
  "Author": "Douglas Ezra Morrison [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-7195-830X>),\nRon Brookmeyer [aut]",
  "Maintainer": "Douglas Ezra Morrison <demorrison@ucdavis.edu>",
  "_user": "morrison-lab",
  "_type": "src",
  "_file": "rwicc_0.2.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/9acc6f6dbbf466221b74f550e006a274a709105fc6ee2852ddad54133dcefaf0",
  "_filesize": 670951,
  "_sha256": "9acc6f6dbbf466221b74f550e006a274a709105fc6ee2852ddad54133dcefaf0",
  "_expires": "2027-01-16T12:10:27.000Z",
  "_created": "2026-10-08T11:47:02.000Z",
  "_published": "2026-10-08T12:10:29.128Z",
  "_buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113294909490,
      "time": 196,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11547979153"
    },
    {
      "job": 113294909672,
      "time": 184,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11548209010"
    },
    {
      "job": 113294909444,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11548893112"
    },
    {
      "job": 113294909399,
      "time": 192,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11549082690"
    },
    {
      "job": 113292987296,
      "time": 307,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11547668238"
    },
    {
      "job": 113294909423,
      "time": 142,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11548503042"
    },
    {
      "job": 113294909600,
      "time": 103,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11547528623"
    },
    {
      "job": 113294909513,
      "time": 148,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11547453957"
    },
    {
      "job": 113294909477,
      "time": 131,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11548602756"
    }
  ],
  "_upstream": "https://github.com/morrison-lab/rwicc",
  "_commit": {
    "id": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
    "author": "Douglas Ezra Morrison <dezramorrison@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #32 from d-morrison/prep-cran-release\n\nPrepare 0.2.0 CRAN resubmission",
    "time": 1780073636
  },
  "_maintainer": {
    "name": "Douglas Ezra Morrison",
    "email": "demorrison@ucdavis.edu",
    "login": "d-morrison",
    "orcid": "0000-0002-7195-830X",
    "description": "",
    "uuid": 2474437
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "biglm",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "lobstr",
      "role": "Imports"
    },
    {
      "package": "arm",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "plotly",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "pander",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    },
    {
      "package": "badger",
      "role": "Suggests"
    }
  ],
  "_owner": "morrison-lab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 2
    },
    {
      "week": "2025-52",
      "n": 1
    },
    {
      "week": "2026-22",
      "n": 7
    }
  ],
  "_tags": [
    {
      "name": "v0.2.0",
      "date": "2026-05-27"
    }
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "d-morrison",
      "count": 180,
      "uuid": 2474437
    },
    {
      "user": "copilot",
      "count": 36,
      "uuid": 198982749
    },
    {
      "user": "dem-extra1",
      "count": 15,
      "uuid": 112029334
    }
  ],
  "_userbio": {
    "uuid": 104235520,
    "type": "organization",
    "name": "Morrison-Lab",
    "followers": 3
  },
  "_downloads": {
    "count": 349,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rwicc"
  },
  "_devurl": "https://github.com/d-morrison/rwicc",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rwicc.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/morrison-lab/rwicc",
  "_realowner": "morrison-lab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.3",
      "date": "2022-03-09"
    },
    {
      "version": "0.2.0",
      "date": "2026-05-27"
    }
  ],
  "_exports": [
    "build_event_date_possibilities_table",
    "build_omega_table",
    "fit_joint_model",
    "fit_midpoint_model",
    "fit_uniform_model",
    "graph_omega",
    "plot_CDF",
    "plot_censoring_data",
    "plot_phi_curves",
    "simulate_interval_censoring"
  ],
  "_help": [
    {
      "page": "build_event_date_possibilities_table",
      "title": "Build table of event date possibilities",
      "topics": [
        "build_event_date_possibilities_table"
      ]
    },
    {
      "page": "build_omega_table",
      "title": "Build table of dates with possible seroconversions in dataset",
      "topics": [
        "build_omega_table"
      ]
    },
    {
      "page": "build_phi_function_from_coefs",
      "title": "convert a pair of simple logistic regression coefficients into P(Y|T) curve:",
      "topics": [
        "build_phi_function_from_coefs"
      ]
    },
    {
      "page": "compute_mu",
      "title": "compute mean window period duration from simple logistic regression coefficients",
      "topics": [
        "compute_mu"
      ]
    },
    {
      "page": "fit_joint_model",
      "title": "Fit a logistic regression model with an interval-censored covariate",
      "topics": [
        "fit_joint_model"
      ]
    },
    {
      "page": "fit_midpoint_model",
      "title": "Fit model using midpoint imputation",
      "topics": [
        "fit_midpoint_model"
      ]
    },
    {
      "page": "fit_uniform_model",
      "title": "Fit model using uniform imputation",
      "topics": [
        "fit_uniform_model"
      ]
    },
    {
      "page": "graph_omega",
      "title": "Graph seroconversion hazard model",
      "topics": [
        "graph_omega"
      ]
    },
    {
      "page": "plot_CDF",
      "title": "plot estimated and true CDFs for seroconversion date distribution",
      "topics": [
        "plot_CDF"
      ]
    },
    {
      "page": "plot_censoring_data",
      "title": "Plot censoring data",
      "topics": [
        "plot_censoring_data"
      ]
    },
    {
      "page": "plot_phi_curves",
      "title": "Plot true and estimated curves for P(Y=1|T=t)",
      "topics": [
        "plot_phi_curves"
      ]
    },
    {
      "page": "rwicc",
      "title": "rwicc: Regression with Interval-Censored Covariates",
      "topics": [
        "rwicc"
      ]
    },
    {
      "page": "seroconversion_inverse_survival_function",
      "title": "Inverse survival function for time-to-event variable with linear hazard function",
      "topics": [
        "seroconversion_inverse_survival_function"
      ]
    },
    {
      "page": "simulate_interval_censoring",
      "title": "Simulate a dataset with interval-censored seroconversion dates",
      "topics": [
        "simulate_interval_censoring"
      ]
    }
  ],
  "_readme": "https://github.com/morrison-lab/rwicc/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "arm",
    "askpass",
    "base64enc",
    "biglm",
    "boot",
    "bslib",
    "cachem",
    "cli",
    "coda",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "data.table",
    "DBI",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "lme4",
    "lobstr",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "minqa",
    "nlme",
    "nloptr",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "plotly",
    "prettyunits",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "how-to-use-rwicc.Rmd",
      "filename": "how-to-use-rwicc.html",
      "title": "how-to-use-rwicc",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2021-05-21 05:35:59",
      "modified": "2026-05-27 03:54:50",
      "commits": 17
    },
    {
      "source": "visualize-study-design.Rmd",
      "filename": "visualize-study-design.html",
      "title": "visualize-study-design",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2023-03-21 16:18:54",
      "modified": "2025-11-13 23:57:27",
      "commits": 5
    }
  ],
  "_score": 5.1205739312058505,
  "_indexed": true,
  "_nocasepkg": "rwicc",
  "_universes": [
    "morrison-lab",
    "d-morrison"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:49:45.000Z",
      "distro": "resolute",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/7ce641da9b28552e5436b9ed91a68dc2cc0044bd14a7b4037b3cb9ea1cc586e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:49:32.000Z",
      "distro": "resolute",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/fdf35effe347ca8378e1a6836148e3fb690474a0ab9a7ad455d7822d27b2d7ee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.0.9000",
      "date": "2026-10-08T12:08:45.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/4cbe95b30aae57acfc93ec4f30d73be19adea48fb3870341d39e65263880c039",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.0.9000",
      "date": "2026-10-08T12:08:49.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/45fdf5667251e325e20eee84466c81b8e9bfbfea10a2608010646f719c788c5c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:49:48.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/81c518c7c8ffe7e10e16d56362efe71b28fdba5d5e4a18eac7730ad27bf60562",
      "status": "success",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:48:23.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/a777f151459d1c06cd92b87f1749197356e57cce2c9f3fbde64b572d22b7e50b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:48:44.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/31015be4ec6d10adf883e91060a6afcb6df942997bda6ebaf33d9271b41194f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2.0.9000",
      "date": "2026-10-08T11:48:44.000Z",
      "commit": "0ba66920ce966817d951086ede4e6fe3a64f8cde",
      "fileid": "https://r2.ropensci.org/e33fa9be8efc6a72c425c4c4fecf2f98d619433425fd646f51f988a81c653bcb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/morrison-lab/actions/runs/37771787762"
    }
  ]
}